Short Read Eliminator Publications
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2021
The Genomics Of Mimicry: Gene Expression Throughout Development Provides Insights Into Convergent And Divergent Phenotypes In A Müllerian Mimicry System
Stuckert AMM et al.
Molecular Ecology
Establishment And Assessment Of An Amplicon Sequencing Method Targeting The 16S-Its-23S Rrna Operon For Analysis Of The Equine Gut Microbiome
Kinoshita Y et al.
Scientific Reports
Human Genome Integration Of Sars-Cov-2 Contradicted By Long-Read Sequencing
Smits N et al.
bioRxiv
Physiological Responses Of Aspergillus Niger Challenged With Itraconazole
Poulsen JS et al.
Antimicrobial Agents and Chemotherapy
Illuminating The Transposon Insertion Landscape In Plants Using Cas9-Targeted Nanopore Sequencing And A Novel Pipeline
Kirov I et al.
bioRxiv
Optimizing Experimental Design For Genome Sequencing And Assembly With Oxford Nanopore Technologies
Sutton JM et al.
bioRxiv
Chromosome Specific Telomere Lengths And The Minimal Functional Telomere Revealed By Nanopore Sequencing
Sholes SL et al.
bioRxiv
The Draft Chromosome-Level Genome Assembly Of Tetraploid Ground Cherry (Prunus Fruticosa Pall.) From Long Reads
Woehner TW et al.
bioRxiv
Complete Genome Sequence Of A Canadian Strain Of Raoultella Planticola With Metal And Antimicrobial Resistance Genes
Kang M et al.
Microbiology Resource Announcements
The Genome Assembly And Annotation Of The Apollo Butterfly Parnassius Apollo, A Flagship Species For Conservation Biology
Podsiadlowski L et al.
Genome Biology and Evolution
Complete Genome Sequences Of Thermus Thermophilus Strains Hb5002 And Hb5008, Isolated From Mine Hot Spring In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Telomere-To-Telomere Genome Assembly Of Phaeodactylum Tricornutum
Giguere DJ et al.
bioRxiv
Complete Vertebrate Mitogenomes Reveal Widespread Repeats And Gene Duplications
Formenti G et al.
Genome Biology
Telomere-To-Telomere Gapless Chromosomes Of Banana Using Nanopore Sequencing
Belser C et al.
bioRxiv
Long-Read Sequencing To Unravel Complex Structural Variants Of Cep78 Leading To Cone-Rod Dystrophy And Hearing Loss
Ascari G et al.
Frontiers in Cell and Developmental Biology
Recovery Of Complete Genomes And Non-Chromosomal Replicons From Activated Sludge Enrichment Microbial Communities With Long Read Metagenome Sequencing
Krithika A et al.
NPJ Biofilms and Microbiomes
A Genome-Wide Association Study, Supported By A New Chromosome-Level Genome Assembly, Suggests Sox2 As A Main Driver Of The Undifferentiatiated Zz/Zw …
Martínez P et al.
Genomics
Epigenetic Patterns In A Complete Human Genome
Gershman A et al.
bioRxiv
Analysis Of Brugada Syndrome Loci Reveals That Fine-Mapping Clustered Gwas Hits Enhances The Annotation Of Disease-Relevant Variants
del Olmo B et al.
Cell Reports Medicine
Aberrant Integration Of Hepatitis B Virus Dna Promotes Major Restructuring Of Human Hepatocellular Carcinoma Genome Architecture
Alvarez EG et al.
bioRxiv
The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data
Steward RA et al.
Genome Biology and Evolution
Boardion: Real-Time Monitoring Of Oxford Nanopore Sequencing Instruments
Bruno A et al.
BMC Bioinformatics
Complete Genome Sequence Of A Type Iii Ovine Strain Of Mycobacterium Avium Subsp. Paratuberculosis
Bannantine JP et al.
Microbiology Resource Announcements
Recovery Of Complete Genomes And Non-Chromosomal Replicons From Activated Sludge Enrichment Microbial Communities With Long Read Metagenome …
Arumugam K et al.
npj Biofilms and Microbiomes
Insertion Of A Transposable Element In Less Shattering1 (Svles1) Gene Is Not Always Involved In Foxtail Millet (Setaria Italica) Domestication
Fukunaga K et al.
Genetic Resources and Crop Evolution
Complete Genome Sequence Of Thermus Thermophilus Strain Hb5018, Isolated From Mine Hot Spring In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Haplotype-Aware Variant Calling Enables High Accuracy In Nanopore Long-Reads Using Deep Neural Networks
Shafin K et al.
bioRxiv
High-Quality Reference Genome For Clonorchis Sinensis
Young ND et al.
Genomics
The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data
Steward RA et al.
Genome Biology and Evolution
Complete Genome Sequence Of Campylobacter Hepaticus Usa52, Associated With Chicken Spotty Liver Disease
Wu Z et al.
Microbiology Resource Announcements
The Complete Mitochondrial Genome Sequence Of Oryctes Rhinoceros (Coleoptera: Scarabaeidae) Based On Long-Read Nanopore Sequencing
Filipović I et al.
PeerJ
Large Scale Genomic Rearrangements In Selected Arabidopsis Thaliana T-Dna Lines Are Caused By T-Dna Insertion Mutagenesis
Pucker B et al.
bioRxiv
MrHAMER Yields Highly Accurate Single Molecule Viral Sequences Enabling Analysis Of Intra-Host Evolution
Gallardo CM et al.
bioRxiv
Mitochondrial Genome Evolution In Pelagophyte Algae
Sibbald SJ et al.
Genome Biology and Evolution
Establishment And Assessment Of An Amplicon Sequencing Method Targeting The 16S-Its-23S Rrna Operon For Analysis Of The Equine Gut Microbiome
Kinoshita Y et al.
Research Square
A Novel Canis Lupus Familiaris Reference Genome Improves Variant Resolution For Use In Breed-Specific Gwas
Player RA et al.
Life Science Alliance
Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions In Mitochondrial Genomes
Kinkar L et al.
International Journal of Molecular Sciences
A Novel Deletion In Flowering Locus T Modulates Flowering Time In Winter Oilseed Rape
Vollrath P et al.
Theoretical and Applied Genetics
Mitochondrial Genome Of Bulinus Truncatus (Gastropoda: Lymnaeoidea): Implications For Snail Systematics And Schistosome Epidemiology
Young ND et al.
Current Research in Parasitology and Vector-Borne Diseases
Deeply Altered Genome Architecture In The Endoparasitic Flowering Plant Sapria Himalayana Griff.(Rafflesiaceae)
Cai L et al.
Current Biology
Leafgo: Leaf To Genome, A Quick Workflow To Produce High-Quality De Novo Genomes With Third Generation Sequencing Technology
Driguez P et al.
bioRxiv
The Human Origin Recognition Complex Is Essential For Pre-Rc Assembly, Mitosis, And Maintenance Of Nuclear Structure
Chou HC et al.
Elife
Chromosome Size Affects Sequence Divergence Between Species Through The Interplay Of Recombination And Selection
Tigano A et al.
bioRxiv
Catalytically Inactive Cas9 Impairs Dna Replication Fork Progression To Induce Focal Genomic Instability
Okada S et al.
Nucleic Acids Research
2020
Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled
Kovaka S et al.
Nature Biotechnology
Caenorhabditis Elegans Dauers Vary Recovery In Response To Bacteria From Natural Habitat
Bubrig LT et al.
Ecology and Evolution
SILEX: A fast and inexpensive high-quality DNA extraction method suitable for multiple sequencing platforms and recalcitrant plant species
Alonso D et al.
Research Square
Generating High Quality Sequencing Data: A Focus On Sample Prep
Liu K et al.
Genome Generation 2020
Simultaneous Profiling Of Chromatin Accessibility And Methylation On Human Cell Lines With Nanopore Sequencing
Lee I et al.
Nature Methods
Comparison Of Long-Read Methods For Sequencing And Assembly Of A Plant Genome
Murigneux V et al.
Gigascience
Highly Contiguous Assemblies Of 101 Drosophilid Genomes
Kim BY et al.
bioRxiv
Complete Genome Sequence Of A Japanese Clinical Isolate Of Haemophilus Influenzae Type A Strain Tamba230
Kubota M et al.
Microbiology Resource Announcements
Complete Genome Sequence Of A Canadian Klebsiella Michiganensis Strain, Obtained Using Oxford Nanopore Technologies Sequencing
Kang M et al.
Microbiology Resource Announcements
Enhancer Hijacking Determines Extrachromosomal Circular Mycn Amplicon Architecture In Neuroblastoma
Helmsauer K et al.
Nature Communications
Analysis Procedures For Assessing Recovery Of High Quality, Complete, Closed Genomes From Nanopore Long Read Metagenome Sequencing
Arumugam K et al.
bioRxiv
A Phased Canis Lupus Familiaris Labrador Retriever Reference Genome Utilizing High Molecular Weight DNA Extraction Methods And High Resolution Sequencing Technologies
Player RA et al.
bioRxiv
A Draft Genome Of Grass Pea (Lathyrus Sativus), A Resilient Diploid Legume
Emmrich PMF et al.
bioRxiv
Insertion Of An Endogenous Jaagsiekte Sheep Retrovirus Element Into The Bco2-Gene Abolish Its Function And Leads To Yellow Discoloration Of Adipose Tissue In Norwegian Spælsau (Ovis Aries)
Kent MP et al.
bioRxiv
The Complete Mitochondrial Genome Sequence Of Oryctes Rhinoceros (Coleoptera: Scarabaeidae) Based On Long-Read Nanopore Sequencing
Filipovic I et al.
bioRxiv
Complete And Validated Genomes From A Metagenome
Giguere DJ et al.
bioRxiv
Comparison Of Long Read Methods For Sequencing And Assembly Of A Plant Genome
Murigneux V et al.
bioRxiv
Complete Vertebrate Mitogenomes Reveal Widespread Gene Duplications And Repeats
Formenti G et al.
bioRxiv
Chromosome-Level Genome Construction Of A Japanese Stickleback Species Using Ultra-Dense Linkage Analysis Using Single-Cell Sequencing Of Sperms
Yoshitake K et al.
bioRxiv
The Stem Rust Fungus Puccinia Graminis F. Sp. Tritici Induces Centromeric Small RNAs During Late Infection That Direct Genome-Wide DNA Methylation
Sperschneider J et al.
bioRxiv
Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled
Kovaka S et al.
bioRxiv
Caenorhabditis Elegans Dauers Vary Recovery In Response To Bacteria From Natural Habitat
Bubrig LT et al.
bioRxiv
The Knockout Of The Hmg Domain Of The Porcine Sry Gene Causes Sex Reversal In Gene-Edited Pigs
Kurtz S et al.
bioRxiv
Unraveling Molecular Mechanisms Of Immunity And Cancer-Resistance Using The Genomes Of The Neotropical Bats Artibeus Jamaicensis and Pteronotus Mesoamericanus
Scheben A et al.
bioRxiv
The Human Origin Recognition Complex Is Essential For Pre-Rc Assembly, Mitosis And Maintenance Of Nuclear Structure
Chou HC et al.
bioRxiv
The Genomics Of Mimicry: Gene Expression Throughout Development Provides Insights Into Convergent And Divergent Phenotypes In A Müllerian Mimicry System
Stuckert AMM et al.
bioRxiv
Major Impacts Of Widespread Structural Variation On Gene Expression And Crop Improvement In Tomato
Alonge M et al.
Cell
Comparative Genomics Of Muskmelon Reveals A Potential Role For Retrotransposons In The Modification Of Gene Expression
Yano R et al.
Communications Biology
Cell-Cycle-Dependent Erk Signaling Dynamics Direct Fate Specification In The Mammalian Preimplantation Embryo
Pokrass MJ et al.
Developmental Cell
High-Quality Genome Assembly Of Fusarium Oxysporum F. Sp. Lini
Krasnov GS et al.
Frontiers in Genetics
Exploring Rain As Source Of Biological Control Agents For Fire Blight On Apple
Llontop MEM et al.
Frontiers in Microbiology
Chromosome-Scale Assembly Of Winter Oilseed Rape Brassica Napus
Lee HT et al.
Frontiers in Plant Science
Draft Genome Of The Common Snapping Turtle, Chelydra Serpentina, A Model For Phenotypic Plasticity In Reptiles
Das D et al.
G3: Genes, Genomes, Genetics
Identification And Characterization Of Breakpoints And Mutations On Drosophila Melanogaster Balancer Chromosomes
Miller DE et al.
G3: Genes, Genomes, Genetics
A Highly Contiguous Genome For The Golden-Fronted Woodpecker (Melanerpes Aurifrons) Via Hybrid Oxford Nanopore And Short Read Assembly
Wiley G et al.
G3: Genes, Genomes, Genetics
High Contiguity De Novo Genome Sequence Assembly Of Trifoliate Yam (Dioscorea Dumetorum) Using Long Read Sequencing
Siadjeu C et al.
Genes
Ultralow-Input Single-Tube Linked-Read Library Method Enables Short-Read Second-Generation Sequencing Systems To Routinely Generate Highly Accurate and Economical Long-Range Sequencing Information Routinely
Chen Z et al.
Genome Research
Complete Genome Sequence Of Vibrio Rotiferianus Strain Am7
Miyazaki K et al.
Microbiology Resource Announcements
Complete Genome Sequence Of Geobacillus Sp. Strain E55-1, Isolated From Mine Geyser In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Complete Genome Sequence Of Pseudomonas Otitidis Strain Mrb4, Isolated From Lake Biwa In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Complete Genome Sequences Of Rhodothermus Marinus Strains Aa2-13 And Aa3-38, Isolated From Arima Onsen Hot Spring In Japan
Tomariguchi N et al.
Microbiology Resource Announcements
Complete Genome Sequence Of Bacillus Cereus Strain Pl1, Isolated From Soil In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Complete Genome Sequence Of Pseudomonas Coronafaciens Pv. Oryzae 1_6
Baltrus DA et al.
Microbiology Resource Announcements
A Linked‐Read Approach To Museomics: Higher Quality De Novo Genome Assemblies From Degraded Tissues
Colella JP et al.
Molecular Ecology Resources
Draft Genome Resource For Macrophomina Phaseolina Associated With Charcoal Rot In Sorghum
Purushotham N et al.
Molecular Plant-Microbe Interactions
Nanopore Sequencing And The Shasta Toolkit Enable Efficient De Novo Assembly Of Eleven Human Genomes
Shafin K et al.
Nature Biotechnology
A Single Gene Underlies The Dynamic Evolution Of Poplar Sex Determination
Müller NA et al.
Nature Plants
First Record Of A Tandem-Repeat Region Within The Mitochondrial Genome Of Clonorchis Sinensis Using A Long-Read Sequencing Approach
Kinkar L et al.
PLoS Neglected Tropical Diseases
Complete Genome Sequence Of Oryctes Rhinoceros Nudivirus Isolated From The Coconut Rhinoceros Beetle In Solomon Islands
Etebari K et al.
Virus Research
SILEX: A Fast And Inexpensive High-Quality DNA Extraction Method Suitable For Multiple Sequencing Platforms And Recalcitrant Plant Species
Vilanova S et al.
Plant Methods
2019
High Molecular Weight DNA Isolation Method From Diverse Plant Species For Use With Oxford Nanopore Sequencing
Vaillancourt B et al.
bioRxiv
Higher Quality De Novo Genome Assemblies From Degraded Museum Specimens: A Linked-Read Approach To Museomics
Colella JP et al.
bioRxiv
Efficient De Novo Assembly Of Eleven Human Genomes Using Promethion Sequencing And A Novel Nanopore Toolkit
Shafin K et al.
bioRxiv
Enhancer Hijacking Determines Intra-And Extrachromosomal Circular Mycn Amplicon Architecture In Neuroblastoma
Helmsauer K et al.
bioRxiv
Nanopore Sequencing Of DNA Concatemers Reveals Higher-Order Features Of Chromatin Structure
Ulahannan N et al.
bioRxiv
Ultra-Low Input Single Tube Linked-Read Library Method Enables Short-Read NGS Systems To Generate Highly Accurate And Economical Long-Range Sequencing Information For De Novo Genome Assembly and Haplotype Phasing
Chen Z et al.
bioRxiv
Complete Genome Sequences Of Thermus Thermophilus Strains Aa2-20 And Aa2-29, Isolated From Arima Onsen In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Complete Genome Sequence Of Rubrobacter Xylanophilus Strain Aa3-22, Isolated From Arima Onsen In Japan
Tomariguchi N et al.
Microbiology Resource Announcements
Complete Genome Sequencing Of Thermus Thermophilus Strain Hc11, Isolated From Mine Geyser In Japan
Miyazaki K et al.
Microbiology Resource Announcements
Complete Genome Sequence Of Alteromonas Sp. Strain I4, Isolated From The Japan Sea
Miyazaki K et al.
Microbiology Resource Announcements
Rapid Extraction And Size Selection Of High MW DNA For Long-Read Sequencing Using Nanobind Magnetic Disks.
Liu KJ et al.
AGBT 2019. Marco Island, FL
High-Throughput High MW DNA Extraction And Size Selection For Long-Read Sequencing
Liu KJ et al.
ABRF 2019. San Antonio, TX
The Fever Tree: Extracting And Preparing The DNA Of Cinchona Pubescens
Costa V et al.
London Calling 2019. London, UK
High-Throughput High MW DNA Extraction And Size Selection For Long-Read Sequencing
Liu KJ et al.
NHGRI Advanced Genomic Technologies Meeting 2019. Boston, MA
Generating High-Quality Human Reference Genomes Using Promethion Nanopore Sequencing
Miga KH et al.
AGBT 2019. Marco Island, FL
Generating High-Quality Human Reference Genomes Using Promethion Nanopore Sequencing
Jain M et al.
London Calling 2019. London, UK