Short Read Eliminator Publications and Presentations
Siadjeu C, Pucker B, Viehöver P, Albach D, Weisshaar B. High contiguity de novo genome sequence assembly of Trifoliate yam (Dioscorea dumetorum) using long read sequencing. bioRxiv 2020.01.31.928630; doi: https://doi.org/10.1101/2020.01.31.928630
Kovaka S, Fan Y, Ni B, Timp W, Schatz MC. Targeted Nanopore Sequencing by Real-Time Mapping of Raw Electrical Signal with UNCALLED. bioRxiv 2020.02.03.931923; doi: https://doi.org/10.1101/2020.02.03.931923
Baltrus DA, Clark M. Complete Genome Sequence of Pseudomonas coronafaciens pv. oryzae 1_6. Microbiology Resource Announcements Jan 2020, 9 (3) e01564-19; DOI: 10.1128/MRA.01564-19
Tomariguchi N, Miyazaki K. Complete Genome Sequences of Rhodothermus marinus Strains AA2-13 and AA3-38, Isolated from Arima Onsen Hot Spring in Japan. Microbiology Resource Announcements Jan 2020, 9 (2) e01475-19; DOI: 10.1128/MRA.01475-19
Helmsauer et al. Enhancer hijacking determines intra- and extrachromosomal circular MYCN amplicon architecture in neuroblastoma. bioRxiv 2019.12.20.875807; doi: https://doi.org/10.1101/2019.12.20.875807
Ulahannan N et al. Nanopore Sequencing of DNA Concatemers Reveals Higher-Order Features of Chromatin Structure. bioRxiv 833590; doi: https://doi.org/10.1101/833590
Chen Z et al. Ultra-Low Input Single Tube Linked-Read Library Method Enables Short-Read NGS Systems to Generate Highly Accurate and Economical Long-Range Sequencing Information for de novo Genome Assembly and Haplotype Phasing. bioRxiv 852947; doi: https://doi.org/10.1101/852947
Etebari K, Filipović I, Rašić G, Devine GJ, Tsatsia H, Furlong MJ. Complete Genome Sequence of Oryctes Rhinoceros Nudivirus Isolated from Coconut Rhinoceros Beetle in the Solomon Islands. bioRxiv 834036; doi: https://doi.org/10.1101/834036
Miyazaki K, Izumi K. Complete Genome Sequence of Alteromonas sp. Strain I4, Isolated from the Japan Sea. Microbiology Resource Announcements. 2019. 8(47): e01277-19; DOI: 10.1128/MRA.01277-19
Miyazaki K, Tomariguchi N. Complete Genome Sequences of Thermus thermophilus Strains AA2-20 and AA2-29, Isolated from Arima Onsen in Japan." Microbiology Resource Announcements. 2019. 8(31): e00820-19. DOI: 10.1128/MRA.00820-19
Miyazaki K. Complete Genome Sequencing of Thermus thermophilus Strain HC11, Isolated from Mine Geyser in Japan. Microbiology Resource Announcements Sep 2019, 8 (39) e00873-19; DOI: 10.1128/MRA.00873-19
Tomariguchi N, Miyazaki K. Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan. Microbiology Resource Announcements. 2019. 8(34): e00818-19. DOI: 10.1128/MRA.00818-19
Shafin et al. Efficient De Novo Assembly of Eleven Human Genomes Using PromethION Sequencing and a Novel Nanopore Toolkit. bioRxiv 715722; doi: https://doi.org/10.1101/715722
Colella JP, Tigano A, MacManes MD. Higher Quality De Novo Genome Assemblies From Degraded Museum Specimens: a Linked-read Approach to Museomics. bioRxiv 716506; doi: https://doi.org/10.1101/716506
Liu KJ, Kim M, Fedak R, Kilburn D, Burke JM, Ferrao H, Galvin B, Bjornson K, Workman R, Timp W. High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing. NHGRI Advanced Genomic Technologies Meeting 2019. Boston, MA
Jain M. Generating High-Quality Human Reference Genomes Using PromethION Nanopore Sequencing. London Calling 2019. London, UK
Costa V. The Fever Tree: Extracting and Preparing the DNA of Cinchona Pubescens. London Calling 2019. London, UK
Liu KJ, Kim M, Fedak R, Kilburn D, Burke JM, Ferrao H, Galvin B, Bjornson K, Workman R, Timp W. High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing. ABRF2019. San Antonio, TX
Liu KJ, Burke JM, Kilburn D, Fedak R, Wallace VJ, Kim M, Workman R, Timp W, Ferrao H, Bjornson K, Galvin B. Rapid Extraction and Size Selection of High MW DNA for Long-Read Sequencing Using Nanobind Magnetic Disks. AGBT 2019. Marco Island, FL
Miga K. Generating High-Quality Human Reference Genomes Using PromethION Nanopore Sequencing. AGBT 2019. Marco Island, FL
