Circulomics - Short Read Eliminator Publications, Size Selection

Short Read Eliminator Publications and Presentations

2020

The Knockout of the HMG Domain of the Porcine SRY Gene Causes Sex Reversal in Gene-edited Pigs

The Complete Mitochondrial Genome Sequence of Oryctes Rhinoceros (Coleoptera: Scarabaeidae) Based on Long-read Nanopore Sequencing

Filipovic I et al. bioRxiv 2020.04.27.065235; doi:

A Draft Genome of Grass Pea (Lathyrus sativus), a Resilient Diploid Legume

Emmerich PMF et al. bioRxiv 2020.04.24.058164; doi:

Complete and Validated Genomes from a Metagenome

Giguere DJ et al. bioRxiv 2020.04.08.032540; doi: https://doi.org/10.1101/2020.04.08.032540

Caenorhabditis elegans Dauers Vary Recovery in Response to Bacteria from Natural Habitat

Bubrig LT et al. bioRxiv 2020.04.01.020693; doi: https://doi.org/10.1101/2020.04.01.020693

Analysis Procedures for Assessing Recovery of High Quality, Complete, Closed Genomes from Nanopore Long Read Metagenome Sequencing

Arumugam K et al. bioRxiv 2020.03.12.974238; doi: https://doi.org/10.1101/2020.03.12.974238

Draft Genome Resource for Macrophomina phaseolina Associated with Charcoal Rot in Sorghum

Purushotham N et al. Molecular Plant-Microbe Interactions. 2020. doi: https://doi.org/10.1094/MPMI-12-19-0356-A

Complete Genome Sequence of Bacillus cereus Strain PL1, Isolated from Soil in Japan

Miyazaki K et al. Microbiology Resource Announcements Mar 2020, 9 (12) e00195-20; DOI: 10.1128/MRA.00195-20

Exploring Rain as Source of Biological Control Agents for Fire Blight on Apple

Llongtop MEM et al. Front Microbiol. 2020; 11: 199. doi: 10.3389/fmicb.2020.00199

Comparison of Long Read Methods for Sequencing and Assembly of a Plant Genome

Murigneux V et al. bioRxiv 2020.03.16.992933; doi: https://doi.org/10.1101/2020.03.16.992933

High Contiguity De Novo Genome Sequence Assembly of Trifoliate Yam (Dioscorea dumetorum) Using Long Read Sequencing

Siadjeu C et al. bioRxiv 2020.01.31.928630; doi: https://doi.org/10.1101/2020.01.31.928630

Targeted Nanopore Sequencing by Real-Time Mapping of Raw Electrical Signal with UNCALLED

Kovaka S et al. bioRxiv 2020.02.03.931923; doi: https://doi.org/10.1101/2020.02.03.931923

Complete Genome Sequence of Pseudomonas coronafaciens pv. oryzae 1_6

Baltrus DA et al. Microbiology Resource Announcements Jan 2020, 9 (3) e01564-19; DOI: 10.1128/MRA.01564-19

2019

Complete Genome Sequences of Rhodothermus marinus Strains AA2-13 and AA3-38, Isolated from Arima Onsen Hot Spring in Japan

Tomariguchi N et al. Microbiology Resource Announcements Jan 2020, 9 (2) e01475-19; DOI: 10.1128/MRA.01475-19

Enhancer Hijacking Determines Intra- and Extrachromosomal Circular MYCN Amplicon Architecture in Neuroblastoma

Helmsauer et al. bioRxiv 2019.12.20.875807; doi: https://doi.org/10.1101/2019.12.20.875807

Nanopore Sequencing of DNA Concatemers Reveals Higher-Order Features of Chromatin Structure

Ulahannan N et al. bioRxiv 833590; doi: https://doi.org/10.1101/833590

Ultra-Low Input Single Tube Linked-Read Library Method Enables Short-Read NGS Systems to Generate Highly Accurate and Economical Long-Range Sequencing Information for de novo Genome Assembly and Haplotype Phasing

Chen Z et al. bioRxiv 852947; doi: https://doi.org/10.1101/852947

Complete Genome Sequence of Oryctes Rhinoceros Nudivirus Isolated from Coconut Rhinoceros Beetle in the Solomon Islands

Etebari K et al. bioRxiv 834036; doi: https://doi.org/10.1101/834036

Complete Genome Sequence of Alteromonas sp. Strain I4, Isolated from the Japan Sea

Miyazaki K et al. Microbiology Resource Announcements. 2019. 8(47): e01277-19; DOI: 10.1128/MRA.01277-19

Complete Genome Sequences of Thermus thermophilus Strains AA2-20 and AA2-29, Isolated from Arima Onsen in Japan.

Miyazaki K et al. Microbiology Resource Announcements. 2019. 8(31): e00820-19. DOI: 10.1128/MRA.00820-19

Complete Genome Sequencing of Thermus thermophilus Strain HC11, Isolated from Mine Geyser in Japan

Miyazaki K. Microbiology Resource Announcements Sep 2019, 8 (39) e00873-19; DOI: 10.1128/MRA.00873-19

Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan

Tomariguchi N et al. Microbiology Resource Announcements. 2019. 8(34): e00818-19. DOI: 10.1128/MRA.00818-19

Efficient De Novo Assembly of Eleven Human Genomes Using PromethION Sequencing and a Novel Nanopore Toolkit

Shafin et al. bioRxiv 715722; doi: https://doi.org/10.1101/715722

Higher Quality De Novo Genome Assemblies From Degraded Museum Specimens: a Linked-read Approach to Museomics

Colella JP et al. bioRxiv 716506; doi: https://doi.org/10.1101/716506

High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing

Liu KJ et al. NHGRI Advanced Genomic Technologies Meeting 2019. Boston, MA

Generating High-Quality Human Reference Genomes Using PromethION Nanopore Sequencing

Jain M et al. London Calling 2019. London, UK

The Fever Tree: Extracting and Preparing the DNA of Cinchona Pubescens.

Costa V. London Calling 2019. London, UK

High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing

Liu KJ et al. ABRF2019. San Antonio, TX

Rapid Extraction and Size Selection of High MW DNA for Long-Read Sequencing Using Nanobind Magnetic Disks

Liu KJ et al. AGBT 2019. Marco Island, FL

Generating High-Quality Human Reference Genomes Using PromethION Nanopore Sequencing

Miga K et al. AGBT 2019. Marco Island, FL

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