Short Read Eliminator Publications

See what we and our customers have used our kits for.

Click the sample type icon to go to the paper.

2021
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Complete Genome Sequence Of A Type Iii Ovine Strain Of Mycobacterium Avium Subsp. Paratuberculosis

Bannantine JP et al.

Microbiology Resource Announcements

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Recovery Of Complete Genomes And Non-Chromosomal Replicons From Activated Sludge Enrichment Microbial Communities With Long Read Metagenome …

Arumugam K et al.

npj Biofilms and Microbiomes

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Insertion Of A Transposable Element In Less Shattering1 (Svles1) Gene Is Not Always Involved In Foxtail Millet (Setaria Italica) Domestication

Fukunaga K et al.

Genetic Resources and Crop Evolution

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Complete Genome Sequence Of Thermus Thermophilus Strain Hb5018, Isolated From Mine Hot Spring In Japan

Miyazaki K et al.

Microbiology Resource Announcements

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Haplotype-Aware Variant Calling Enables High Accuracy In Nanopore Long-Reads Using Deep Neural Networks

Shafin K et al.

bioRxiv

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High-Quality Reference Genome For Clonorchis Sinensis

Young ND et al.

Genomics

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The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data

Steward RA et al.

Genome Biology and Evolution

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Complete Genome Sequence Of Campylobacter Hepaticus Usa52, Associated With Chicken Spotty Liver Disease

Wu Z et al.

Microbiology Resource Announcements

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The Complete Mitochondrial Genome Sequence Of Oryctes Rhinoceros (Coleoptera: Scarabaeidae) Based On Long-Read Nanopore Sequencing

Filipović I et al.

PeerJ

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Large Scale Genomic Rearrangements In Selected Arabidopsis Thaliana T-Dna Lines Are Caused By T-Dna Insertion Mutagenesis

Pucker B et al.

bioRxiv

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MrHAMER Yields Highly Accurate Single Molecule Viral Sequences Enabling Analysis Of Intra-Host Evolution

Gallardo CM et al.

bioRxiv

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Mitochondrial Genome Evolution In Pelagophyte Algae

Sibbald SJ et al.

Genome Biology and Evolution

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Establishment And Assessment Of An Amplicon Sequencing Method Targeting The 16S-Its-23S Rrna Operon For Analysis Of The Equine Gut Microbiome

Kinoshita Y et al.

Research Square

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A Novel Canis Lupus Familiaris Reference Genome Improves Variant Resolution For Use In Breed-Specific Gwas

Player RA et al.

Life Science Alliance

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Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions In Mitochondrial Genomes

Kinkar L et al.

International Journal of Molecular Sciences

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A Novel Deletion In Flowering Locus T Modulates Flowering Time In Winter Oilseed Rape

Vollrath P et al.

Theoretical and Applied Genetics

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Mitochondrial Genome Of Bulinus Truncatus (Gastropoda: Lymnaeoidea): Implications For Snail Systematics And Schistosome Epidemiology

Young ND et al.

Current Research in Parasitology and Vector-Borne Diseases

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Deeply Altered Genome Architecture In The Endoparasitic Flowering Plant Sapria Himalayana Griff.(Rafflesiaceae)

Cai L et al.

Current Biology

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Leafgo: Leaf To Genome, A Quick Workflow To Produce High-Quality De Novo Genomes With Third Generation Sequencing Technology

Driguez P et al.

bioRxiv

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The Human Origin Recognition Complex Is Essential For Pre-Rc Assembly, Mitosis, And Maintenance Of Nuclear Structure

Chou HC et al.

Elife

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Chromosome Size Affects Sequence Divergence Between Species Through The Interplay Of Recombination And Selection

Tigano A et al.

bioRxiv

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Catalytically Inactive Cas9 Impairs Dna Replication Fork Progression To Induce Focal Genomic Instability

Okada S et al.

Nucleic Acids Research

2020
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Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled

Kovaka S et al.

Nature Biotechnology

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Caenorhabditis Elegans Dauers Vary Recovery In Response To Bacteria From Natural Habitat

Bubrig LT et al.

Ecology and Evolution

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SILEX: A fast and inexpensive high-quality DNA extraction method suitable for multiple sequencing platforms and recalcitrant plant species

Alonso D et al.

Research Square

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Generating High Quality Sequencing Data: A Focus On Sample Prep

Liu K et al.

Genome Generation 2020

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Simultaneous Profiling Of Chromatin Accessibility And Methylation On Human Cell Lines With Nanopore Sequencing

Lee I et al.

Nature Methods

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Comparison Of Long-Read Methods For Sequencing And Assembly Of A Plant Genome

Murigneux V et al.

Gigascience

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Highly Contiguous Assemblies Of 101 Drosophilid Genomes

Kim BY et al.

bioRxiv

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Complete Genome Sequence Of A Japanese Clinical Isolate Of Haemophilus Influenzae Type A Strain Tamba230

Kubota M et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of A Canadian Klebsiella Michiganensis Strain, Obtained Using Oxford Nanopore Technologies Sequencing

Kang M et al.

Microbiology Resource Announcements

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Enhancer Hijacking Determines Extrachromosomal Circular Mycn Amplicon Architecture In Neuroblastoma

Helmsauer K et al.

Nature Communications

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Analysis Procedures For Assessing Recovery Of High Quality, Complete, Closed Genomes From Nanopore Long Read Metagenome Sequencing

Arumugam K et al.

bioRxiv

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A Phased Canis Lupus Familiaris Labrador Retriever Reference Genome Utilizing High Molecular Weight DNA Extraction Methods And High Resolution Sequencing Technologies

Player RA et al.

bioRxiv

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A Draft Genome Of Grass Pea (Lathyrus Sativus), A Resilient Diploid Legume

Emmrich PMF et al.

bioRxiv

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Insertion Of An Endogenous Jaagsiekte Sheep Retrovirus Element Into The Bco2-Gene Abolish Its Function And Leads To Yellow Discoloration Of Adipose Tissue In Norwegian Spælsau (Ovis Aries)

Kent MP et al.

bioRxiv

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The Complete Mitochondrial Genome Sequence Of Oryctes Rhinoceros (Coleoptera: Scarabaeidae) Based On Long-Read Nanopore Sequencing

Filipovic I et al.

bioRxiv

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Complete And Validated Genomes From A Metagenome

Giguere DJ et al.

bioRxiv

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Comparison Of Long Read Methods For Sequencing And Assembly Of A Plant Genome

Murigneux V et al.

bioRxiv

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Complete Vertebrate Mitogenomes Reveal Widespread Gene Duplications And Repeats

Formenti G et al.

bioRxiv

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Chromosome-Level Genome Construction Of A Japanese Stickleback Species Using Ultra-Dense Linkage Analysis Using Single-Cell Sequencing Of Sperms

Yoshitake K et al.

bioRxiv

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The Stem Rust Fungus Puccinia Graminis F. Sp. Tritici Induces Centromeric Small RNAs During Late Infection That Direct Genome-Wide DNA Methylation

Sperschneider J et al.

bioRxiv

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Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled

Kovaka S et al.

bioRxiv

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Caenorhabditis Elegans Dauers Vary Recovery In Response To Bacteria From Natural Habitat

Bubrig LT et al.

bioRxiv

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The Knockout Of The Hmg Domain Of The Porcine Sry Gene Causes Sex Reversal In Gene-Edited Pigs

Kurtz S et al.

bioRxiv

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Unraveling Molecular Mechanisms Of Immunity And Cancer-Resistance Using The Genomes Of The Neotropical Bats Artibeus Jamaicensis and Pteronotus Mesoamericanus

Scheben A et al.

bioRxiv

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The Human Origin Recognition Complex Is Essential For Pre-Rc Assembly, Mitosis And Maintenance Of Nuclear Structure

Chou HC et al.

bioRxiv

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The Genomics Of Mimicry: Gene Expression Throughout Development Provides Insights Into Convergent And Divergent Phenotypes In A Müllerian Mimicry System

Stuckert AMM et al.

bioRxiv

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Major Impacts Of Widespread Structural Variation On Gene Expression And Crop Improvement In Tomato

Alonge M et al.

Cell

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Comparative Genomics Of Muskmelon Reveals A Potential Role For Retrotransposons In The Modification Of Gene Expression

Yano R et al.

Communications Biology

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Cell-Cycle-Dependent Erk Signaling Dynamics Direct Fate Specification In The Mammalian Preimplantation Embryo

Pokrass MJ et al.

Developmental Cell

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High-Quality Genome Assembly Of Fusarium Oxysporum F. Sp. Lini

Krasnov GS et al.

Frontiers in Genetics

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Exploring Rain As Source Of Biological Control Agents For Fire Blight On Apple

Llontop MEM et al.

Frontiers in Microbiology

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Chromosome-Scale Assembly Of Winter Oilseed Rape Brassica Napus

Lee HT et al.

Frontiers in Plant Science

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Draft Genome Of The Common Snapping Turtle, Chelydra Serpentina, A Model For Phenotypic Plasticity In Reptiles

Das D et al.

G3: Genes, Genomes, Genetics

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Identification And Characterization Of Breakpoints And Mutations On Drosophila Melanogaster Balancer Chromosomes

Miller DE et al.

G3: Genes, Genomes, Genetics

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A Highly Contiguous Genome For The Golden-Fronted Woodpecker (Melanerpes Aurifrons) Via Hybrid Oxford Nanopore And Short Read Assembly

Wiley G et al.

G3: Genes, Genomes, Genetics

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High Contiguity De Novo Genome Sequence Assembly Of Trifoliate Yam (Dioscorea Dumetorum) Using Long Read Sequencing

Siadjeu C et al.

Genes

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Ultralow-Input Single-Tube Linked-Read Library Method Enables Short-Read Second-Generation Sequencing Systems To Routinely Generate Highly Accurate and Economical Long-Range Sequencing Information Routinely

Chen Z et al.

Genome Research

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Complete Genome Sequence Of Vibrio Rotiferianus Strain Am7

Miyazaki K et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of Geobacillus Sp. Strain E55-1, Isolated From Mine Geyser In Japan

Miyazaki K et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of Pseudomonas Otitidis Strain Mrb4, Isolated From Lake Biwa In Japan

Miyazaki K et al.

Microbiology Resource Announcements

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Complete Genome Sequences Of Rhodothermus Marinus Strains Aa2-13 And Aa3-38, Isolated From Arima Onsen Hot Spring In Japan

Tomariguchi N et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of Bacillus Cereus Strain Pl1, Isolated From Soil In Japan

Miyazaki K et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of Pseudomonas Coronafaciens Pv. Oryzae 1_6

Baltrus DA et al.

Microbiology Resource Announcements

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A Linked‐Read Approach To Museomics: Higher Quality De Novo Genome Assemblies From Degraded Tissues

Colella JP et al.

Molecular Ecology Resources

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Draft Genome Resource For Macrophomina Phaseolina Associated With Charcoal Rot In Sorghum

Purushotham N et al.

Molecular Plant-Microbe Interactions

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Nanopore Sequencing And The Shasta Toolkit Enable Efficient De Novo Assembly Of Eleven Human Genomes

Shafin K et al.

Nature Biotechnology

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A Single Gene Underlies The Dynamic Evolution Of Poplar Sex Determination

Müller NA et al.

Nature Plants

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First Record Of A Tandem-Repeat Region Within The Mitochondrial Genome Of Clonorchis Sinensis Using A Long-Read Sequencing Approach

Kinkar L et al.

PLoS Neglected Tropical Diseases

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Complete Genome Sequence Of Oryctes Rhinoceros Nudivirus Isolated From The Coconut Rhinoceros Beetle In Solomon Islands

Etebari K et al.

Virus Research

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SILEX: A Fast And Inexpensive High-Quality DNA Extraction Method Suitable For Multiple Sequencing Platforms And Recalcitrant Plant Species

Vilanova S et al.

Plant Methods

2019
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High Molecular Weight DNA Isolation Method From Diverse Plant Species For Use With Oxford Nanopore Sequencing

Vaillancourt B et al.

bioRxiv

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Higher Quality De Novo Genome Assemblies From Degraded Museum Specimens: A Linked-Read Approach To Museomics

Colella JP et al.

bioRxiv

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Efficient De Novo Assembly Of Eleven Human Genomes Using Promethion Sequencing And A Novel Nanopore Toolkit

Shafin K et al.

bioRxiv

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Enhancer Hijacking Determines Intra-And Extrachromosomal Circular Mycn Amplicon Architecture In Neuroblastoma

Helmsauer K et al.

bioRxiv

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Nanopore Sequencing Of DNA Concatemers Reveals Higher-Order Features Of Chromatin Structure

Ulahannan N et al.

bioRxiv

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Ultra-Low Input Single Tube Linked-Read Library Method Enables Short-Read NGS Systems To Generate Highly Accurate And Economical Long-Range Sequencing Information For De Novo Genome Assembly and Haplotype Phasing

Chen Z et al.

bioRxiv

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Complete Genome Sequences Of Thermus Thermophilus Strains Aa2-20 And Aa2-29, Isolated From Arima Onsen In Japan

Miyazaki K et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of Rubrobacter Xylanophilus Strain Aa3-22, Isolated From Arima Onsen In Japan

Tomariguchi N et al.

Microbiology Resource Announcements

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Complete Genome Sequencing Of Thermus Thermophilus Strain Hc11, Isolated From Mine Geyser In Japan

Miyazaki K et al.

Microbiology Resource Announcements

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Complete Genome Sequence Of Alteromonas Sp. Strain I4, Isolated From The Japan Sea

Miyazaki K et al.

Microbiology Resource Announcements