Liu KJ, Kim M, Kilburn D, Laugharn J, Khoja, H. High Molecular Weight DNA Sample and Library Preparation for Long-Read Sequencing Using Clinical Tissue Specimens. AGBT 2020. Marco Island, FL
Burke JM, Fedak R, Kilburn D, Fan Y, Timp W, Olsen H, Jain M, Liu KJ. Automated High Molecular Weight DNA Extraction for Production Scale Long-Read Sequencing. AGBT 2020. Marco Island, FL
Kovaka S, Fan Y, Ni B, Timp W, Schatz MC. Targeted Nanopore Sequencing by Real-Time Mapping of Raw Electrical Signal with UNCALLED. bioRxiv 2020.02.03.931923; doi: https://doi.org/10.1101/2020.02.03.931923
Wiley G, Miller MJ. A highly contiguous genome for the Golden-fronted Woodpecker (Melanerpes aurifrons) via a hybrid Oxford Nanopore and short read assembly. bioRxiv 2020.01.03.894444; doi: https://doi.org/10.1101/2020.01.03.894444
Law WD, Warren RL, McCallion AS. Establishment of an eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled from Short and Long Reads. Genomics; 2020 doi: https://doi.org/10.1016/j.ygeno.2020.01.009
Kim M, Fedak R, Kilburn D, Burke JM, Liu KJ. High MW DNA Extraction from Diverse Animal and Plant Species. PAGXXVIII 2020. San Diego, CA
Humble E, Dobrynin P, Senn H, Chuven J, Scott AF, Mohr DW, Dudchenko O, Omer AD, Colaric Z, Aiden EL, Wildt D, Oliaji S, Tamazian G, Pukazhenthi B, Ogden R, Koepfli KP. Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild. bioRxiv 867341; doi: https://doi.org/10.1101/867341
Kirubakaran TG, Andersen Ø, Moser M, Arnyasi M, McGinnity P, Lien S, Kent M. A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea. bioRxiv 852145; doi: https://doi.org/10.1101/852145
Hansen KH, Andreasen MR, Pedersen MS, Westh H, Jelsbak L, Schønning K. Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1. Journal of Antimicrobial Chemotherapy. 2019; 74 (11): 3179–3183. doi: https://doi.org/10.1093/jac/dkz349
Vaillancourt B, Buell CR. High molecular weight DNA isolation method from diverse plant species for use with Oxford Nanopore sequencing. bioRxiv 783159; doi: https://doi.org/10.1101/783159
Liu KJ, Kim M, Kilburn D, Laugharn J, Khoja, H. High-Throughput High Molecular Weight DNA Extraction From Human Tissue Samples for Long-Read Sequencing. ASHG 2019. Houston, TX
Hansen KH, Andreasen MR, Pedersen MS, Westh H, Jelsbak L, Schønning K. Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1. Journal of Antimicrobial Chemotherapy. 2019. dkz349, doi.org/10.1093/jac/dkz349
Auber R, Wisecaver J. Algal Nuclei Isolation for Nanopore Sequencing of HMW DNA. protocols.io. dx.doi.org/10.17504/protocols.io.5i2g4ge
Baltrus DA, Clark M, Inderbitzin P, Pignatta D, Knight-Connoni V, Arnold AE. Complete Genome Sequence of Luteibacter pinisoli MAH-14. Microbiology Resource Announcements. Jul 2019, 8 (29) e00774-19; DOI: 10.1128/MRA.00774-19
Liu KJ, Kim M, Fedak R, Kilburn D, Burke JM, Ferrao H, Galvin B, Bjornson K, Workman R, Timp W. High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing. NHGRI Advanced Genomic Technologies Meeting 2019. Boston, MA
Liu KJ, Kim M, Fedak R, Kilburn D, Burke JM, Ferrao H, Galvin B, Bjornson K, Workman R, Timp W. High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing. ABRF2019. San Antonio, TX
Ekholm J, Gu J, Burke JM, Kim M, Sibert J Liu KJ. Streamlined SMRTbell Library Generation Using Addition-Only, Single Tube Strategy for All Library Types Reduces Time to Results. ABRF2019. San Antonio, TX
Costa V. The Fever Tree: Extracting and Preparing the DNA of Cinchona Pubescens. London Calling 2019. London, UK
Liu KJ, Burke JM, Kilburn D, Fedak R, Wallace VJ, Kim M, Workman R, Timp W, Ferrao H, Bjornson K, Galvin B. Rapid Extraction and Size Selection of High MW DNA for Long-Read Sequencing Using Nanobind Magnetic Disks. AGBT 2019. Marco Island, FL
Microbial Multiplexing Workflow on the Sequel System Using the SMRTbell Express Template Prep Kit 2.0. Feb 2019. PacBio Application Note.
Liu KJ, Kim M, Fedak R, Kilburn D, Burke JM, Ferrao H, Bjornson K, Galvin B, Workman R, Timp W. Rapid High MW DNA Extraction from Plant, Insect, Cell, and Tissue Samples for Long-Read Sequencing Using Nanobind Magnetic Disks. PAGXXVII. San Diego, CA
Liu KJ, Kim M, Fedak R, Kilburn D, Burke JM, Ferrao H, Bjornson K, Galvin B, Workman R, Timp W. Scaling Up Production of HMW DNA. PAGXXVII. San Diego, CA
Liu KJ, Burke JM, Kilburn D, Fedak R, Wallace VJ, Kim M, Workman R, Timp W, Ferrao H, Bjornson K, Galvin B, Sadowski H, Proskow C. Nanobind Magnetic Disks for Rapid High MW DNA Extraction and Library Preparation In Long-Read Sequencing and Optical Mapping Applications. ASHG 2018. San Diego, CA
Wong J, Heiner C, Kim M, Ferrrao H, Wallace VJ, Eng K, Fedak R, Wilson J, Kilburn D, Ashby M, Baybayan P, Burke JM, Bjornson K, Liu KJ. Single Chromosomal Genome Assemblies on the Sequel System with Circulomics High Molecular Weight DNA Extraction for Microbes. ASM Conf on NGS 2018. Tysons, VA
Wong J, Heiner C, Kim M, Wallace VJ, Eng K, Fedak R, Kilburn D, Ashby M, Baybayan P, Burke JM, Liu KJ. Single Chromosomal Genome Assemblies on the Sequel System with Circulomics High Molecular Weight DNA Extraction for Microbes. Lake Arrowhead Microbial Genomics 2018. Lake Arrowhead, CA
Liu K et al. Nanobind High MW DNA Extraction and Library Preparation For Long-Read Sequencing and Optical Mapping. G10K Annual Meeting 2018. New York
Fuentes-Utrilla P et al. Get it Bigger, Better, Barcoded. Genome Science 2018. Nottingham, UK
Heiner C, Kim M, Ferrrao H, Wallace VJ, Eng K, Fedak R, Wong J, Kilburn D, Ashby M, Baybayan P, Burke JM, Bjornson K, Liu KJ. Single Chromosomal Genome Assemblies on the Sequel System with Circulomics High Molecular Weight DNA Extraction for Microbes. ASM Microbe 2018. Atlanta, GA
Liu, Kelvin et al. Nanobind Magnetic Disks for Rapid High MW DNA Extraction and Library Preparation in Long-Read Sequencing and Optical Mapping Applications. NHGRI Advanced Sequencing Meeting 2018. Boston, MA
Workman R, Fedak R, Kilburn D, Hao S, Liu KJ, and Timp W. High Molecular Weight DNA Extraction from Recalcitrant Plant Species for Third Generation Sequencing. Protocol Exchange (2018) doi: 10.1038/protex.2018.059
Wittenberg, Alex et al. PromethION Sequencing of Complex Plant Genomes. London Calling 2018. London, UK
Workman R et al. Optimizing High Molecular Weight Conifer gDNA Extraction and Single Molecule Sequencing in the Redwood Genome Project. SFAF 2018. Santa Fe, NM
Workman R et al. Optimizing High Molecular Weight gDNA Extraction for Single Molecule Sequencing in the Redwood Genome Project. ABRF 2018. Myrtle Beach, FL
Workman, R et al. Nanopore Sequencing in the Redwood Genome Project: DNA Extraction to Sequencing Optimization. Nanopore Day DC 2018. Washington DC
Workman R, Hao S, Fedak R, Liu KJ, Salzberg SL, Neale D, Timp W. High Molecular Weight Conifer DNA Extraction for Nanopore Sequencing. AGBT 2018. Orlando, FL
Timp, W et al. Extracting DNA for Nanopore Sequencing in the Redwood Genome Project. Nanopore Community Meeting 2017. New York
Zhang Y, Zhang Y, Burke JM, Gleitsman K, Friedrich SM, Liu KJ, and Wang TH. A Simple Thermoplastic Substrate Containing Hierarchical Silica Lamellae for High-Molecular-Weight DNA Extraction. Adv Mater. 2016 Dec;28 (48):10630-10636. doi: 10.1002/adma.201603738.
