Nanobind Publications and Presentations
2020
A Draft Genome of Grass Pea (Lathyrus sativus), a Resilient Diploid Legume
Emmerich PMF et al. bioRxiv 2020.04.24.058164; doi:
The Giant Sequoia Genome and Proliferation of Disease Resistance Genes
Scott AD et al. bioRxiv 2020.03.17.995944; doi: https://doi.org/10.1101/2020.03.17.995944
Targeted Nanopore Sequencing with Cas9-Guided Adapter Ligation
Gilpatrick T et al. Nature Biotech. 2020. https://doi.org/10.1038/s41587-020-0407-5
Rubin IMC et al. Journal of Antimicrobial Chemotherapy. 2020. dkaa074. doi: https://doi.org/10.1093/jac/dkaa074
Wang J et al. bioRxiv 2020.03.10.985440; doi: https://doi.org/10.1101/2020.03.10.985440
Generating Ultra Long Reads on Oxford Nanopore MinION/GridION/PromethION
Liu KJ et al. ABRF 2020. Palm Springs, CA
Liu KJ et al. AGBT 2020. Marco Island, FL
Automated High Molecular Weight DNA Extraction for Production Scale Long-Read Sequencing
Burke JM et al. AGBT 2020. Marco Island, FL
Targeted Nanopore Sequencing by Real-Time Mapping of Raw Electrical Signal with UNCALLED
Kovaka S et al. bioRxiv 2020.02.03.931923; doi: https://doi.org/10.1101/2020.02.03.931923
Wiley G et al. bioRxiv 2020.01.03.894444; doi: https://doi.org/10.1101/2020.01.03.894444
Law WD et al. Genomics; 2020 doi: https://doi.org/10.1016/j.ygeno.2020.01.009
High MW DNA Extraction from Diverse Animal and Plant Species
Kim M et al. PAGXXVIII 2020. San Diego, CA
2019
Humble E et al. bioRxiv 867341; doi: https://doi.org/10.1101/867341
A Nanopore Based Chromosome-level Assembly Representing Atlantic Cod from the Celtic Sea
Kirubakaran TG et al. bioRxiv 852145; doi: https://doi.org/10.1101/852145
Vaillancourt B et al. bioRxiv 783159; doi: https://doi.org/10.1101/783159
Liu KJ et al. ASHG 2019. Houston, TX
Hansen KH et al. Journal of Antimicrobial Chemotherapy. 2019. dkz349, doi.org/10.1093/jac/dkz349
Algal Nuclei Isolation for Nanopore Sequencing of HMW DNA
Auber R et al. protocols.io. doi: dx.doi.org/10.17504/protocols.io.5i2g4ge
Complete Genome Sequence of Luteibacter pinisoli MAH-14
Baltrus DA et al. Microbiology Resource Announcements. Jul 2019, 8 (29) e00774-19; DOI: 10.1128/MRA.00774-19
High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing
Liu KJ et al. NHGRI Advanced Genomic Technologies Meeting 2019. Boston, MA
High-Throughput High MW DNA Extraction and Size Selection for Long-Read Sequencing
Liu KJ et al. ABRF2019. San Antonio, TX
Ekholm J et al. ABRF2019. San Antonio, TX
The Fever Tree: Extracting and Preparing the DNA of Cinchona Pubescens
Costa V. London Calling 2019. London, UK
Liu KJ et al. AGBT 2019. Marco Island, FL
Feb 2019. PacBio Application Note.
Liu KJ et al. PAGXXVII. 2019. San Diego, CA
Scaling Up Production of HMW DNA
Liu KJ et al. PAGXXVII. 2019. San Diego, CA
2018
Liu KJ et al. ASHG 2018. San Diego, CA
Single Chromosomal Genome Assemblies on the Sequel System with Circulomics High Molecular Weight DNA Extraction for Microbes
Wong J et al. ASM Conf on NGS 2018. Tysons, VA
Single Chromosomal Genome Assemblies on the Sequel System with Circulomics High Molecular Weight DNA Extraction for Microbes
Wong J et al. Lake Arrowhead Microbial Genomics 2018. Lake Arrowhead, CA
Nanobind High MW DNA Extraction and Library Preparation For Long-Read Sequencing and Optical Mapping
Liu K et al. G10K Annual Meeting 2018. New York
Get it Bigger, Better, Barcoded
Fuentes-Utrilla P et al. Genome Science 2018. Nottingham, UK
Heiner C et al. ASM Microbe 2018. Atlanta, GA
Nanobind Magnetic Disks for Rapid High MW DNA Extraction and Library Preparation in Long-Read Sequencing and Optical Mapping Applications
Liu K et al. NHGRI Advanced Sequencing Meeting 2018. Boston, MA
High Molecular Weight DNA Extraction from Recalcitrant Plant Species for Third Generation Sequencing
Workman R et al. Protocol Exchange (2018) doi: 10.1038/protex.2018.059
PromethION Sequencing of Complex Plant Genomes
Wittenberg A et al. London Calling 2018. London, UK
Optimizing High Molecular Weight Conifer gDNA Extraction and Single Molecule Sequencing in the Redwood Genome Project
Workman R et al. SFAF 2018. Santa Fe, NM
Optimizing High Molecular Weight gDNA Extraction for Single Molecule Sequencing in the Redwood Genome Project
Workman R et al. ABRF 2018. Myrtle Beach, FL
Nanopore Sequencing in the Redwood Genome Project: DNA Extraction to Sequencing Optimization
Workman, R et al. Nanopore Day DC 2018. Washington DC
High Molecular Weight Conifer DNA Extraction for Nanopore Sequencing
Workman R et al. AGBT 2018. Orlando, FL
2017
Extracting DNA for Nanopore Sequencing in the Redwood Genome Project
Timp, W et al. Nanopore Community Meeting 2017. New York
2016
Zhang Y et al. Adv Mater. 2016 Dec;28 (48):10630-10636. doi: 10.1002/adma.201603738.