Nanobind Publications

See what we and our customers have used our kits for.

Click the sample type icon to go to the paper.

2021
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Human Genome Integration Of Sars-Cov-2 Contradicted By Long-Read Sequencing

Smits N et al.

bioRxiv

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Complete Genome Sequence Of A Canadian Strain Of Raoultella Planticola With Metal And Antimicrobial Resistance Genes

Kang M et al.

Microbiology Resource Announcements

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The Genome Assembly And Annotation Of The Apollo Butterfly Parnassius Apollo, A Flagship Species For Conservation Biology

Podsiadlowski L et al.

Genome Biology and Evolution

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Complete Vertebrate Mitogenomes Reveal Widespread Repeats And Gene Duplications

Formenti G et al.

Genome Biology

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Genome Assembly Of The Popular Korean Soybean Cultivar Hwangkeum

Jeong SC et al.

bioRxiv

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Fatal Exudative Dermatitis In Island Populations Of Red Squirrels (Sciurus Vulgaris): Spillover Of A Virulent Staphylococcus Aureus Clone (St49) From Reservoir Hosts

Fountain K et al.

Microbia Genomics

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Sex Chromosome Transformation And The Origin Of A Male-Specific X Chromosome In The Creeping Vole

Couger MB et al.

Science

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A Chromosome‐Level Amaranthus Cruentus Genome Assembly Highlights Gene Family Evolution And Biosynthetic Gene Clusters That May Underpin The Nutritional Value …

Ma X et al.

The Plant Journal

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Induction Of An Immortalized Songbird Cell Line Allows For Gene Characterization And Knockout By Crispr-Cas9

Biegler MT et al.

bioRxiv

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Chromosomal Assembly Of The Nuclear Genome Of The Endosymbiont-Bearing Trypanosomatid Angomonas Deanei

Davey JW et al.

G3: Genes, Genomes, Genetics

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The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data

Steward RA et al.

Genome Biology and Evolution

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Epigenetically Regulated Digital Signaling Defines Epithelial Innate Immunity At The Tissue Level

Clark HR et al.

Nature Communications

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Rapid Characterization Of Complex Genomic Regions Using Cas9 Enrichment And Nanopore Sequencing

Bruijnesteijn J et al.

bioRxiv

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Haplotype-Aware Variant Calling Enables High Accuracy In Nanopore Long-Reads Using Deep Neural Networks

Shafin K et al.

bioRxiv

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High-Quality Reference Genome For Clonorchis Sinensis

Young ND et al.

Genomics

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The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data

Steward RA et al.

Genome Biology and Evolution

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Dna Preparation In Vitis Vinifera L. For Third Generation Sequencing

Bibi AC et al.

bioRxiv

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Mitochondrial Genome Of Bulinus Truncatus (Gastropoda: Lymnaeoidea): Implications For Snail Systematics And Schistosome Epidemiology

Young ND et al.

Current Research in Parasitology and Vector-Borne Diseases

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Nanopore Sequencing Resolves Elusive Long Tandem-Repeat Regions In Mitochondrial Genomes

Kinkar L et al.

International Journal of Molecular Sciences

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A Novel Canis Lupus Familiaris Reference Genome Improves Variant Resolution For Use In Breed-Specific Gwas

Player RA et al.

Life Science Alliance

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Antimicrobial Resistance And Gene Regulation In Enteroaggregative Escherichia Coli From Egyptian Children With Diarrhoea: Similarities And Differences

Abdelwahab R et al.

Virulence

2020
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Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled

Kovaka S et al.

Nature Biotechnology

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Ecological Adaptation In Atlantic Herring Is Associated With Large Shifts In Allele Frequencies At Hundreds Of Loci

Han F et al.

eLife

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De Novo Whole-Genome Sequencing And Annotation Of Pathogenic Bovine Pasteurella Multocida Type A: 3 Strains

Livingstone M et al.

Microbiology Resource Announcements

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Chromosomal Assembly Of The Nuclear Genome Of The Endosymbiont-Bearing Trypanosomatid Angomonas Deanei

Davey JW et al.

Developmental Cell

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High Data Throughput and Low Cost Ultra Long Nanopore Sequencing

Kilburn D et al.

Nanopore Community Meeting 2020

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Adventures Towards Error-Free Genomes

Balacco J et al.

PacBio Virtual Global Summit 2020

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Generating High Quality Sequencing Data: A Focus On Sample Prep

Liu KJ et al.

Genome Generation 2020

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Optimizing the Extraction of High Molecular Weight DNA From Tissue

Kim M et al.

Joint Webinar with Covaris

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Generating Large Numbers of Ultra Long Reads on PromethION

Kilburn D et al.

London Calling 2020 Online

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Complete Microbial Genomes For Public Health In Australia And The Southwest Pacific

Baines SL et al.

Microbial Genomics

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Genome Mining And Metabolomics Uncover A Rare D-Capreomycidine Containing Natural Product And Its Biosynthetic Gene Cluster

Tryon JH et al.

ACS Chemical Biology

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Chromosomal Translocation Disrupting The SMAD4 Gene Resulting In The Combined Phenotype Of Juvenile Polyposis Syndrome And Hereditary Hemorrhagic Telangiectasia

Aagaard KS et al.

Molecular Genetics & Genomic Medicine

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3D Printing-Enabled DNA Extraction For Long-Read Genomics

Agrawal P et al.

ACS Omega

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A Phased Canis Lupus Familiaris Labrador Retriever Reference Genome Utilizing High Molecular Weight Dna Extraction Methods And High Resolution Sequencing Technologies

Player RA et al.

bioRxiv

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Long-Read Sequencing To Interrogate Strain-Level Variation Among Adherent-Invasive Escherichia Coli Isolated From Human Intestinal Tissue

Wang J et al.

bioRxiv

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A Draft Genome Of Grass Pea (Lathyrus Sativus), A Resilient Diploid Legume

Emmrich PMF et al.

bioRxiv

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The Giant Sequoia Genome And Proliferation Of Disease Resistance Genes

Scott AD et al.

bioRxiv

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Complete Vertebrate Mitogenomes Reveal Widespread Gene Duplications And Repeats

Formenti G et al.

bioRxiv

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Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled

Kovaka S et al.

bioRxiv

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Huntingtin Lowering Reduces Somatic Instability At CAG-Expanded Loci

Coffey SR et al.

bioRxiv

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The Genetic Architecture Underlying Ecological Adaptation In Atlantic Herring Is Not Consistent With The Infinitesimal Model

Han F et al.

bioRxiv

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A Singleton NLR Of Recent Origin Causes Hybrid Necrosis In Arabidopsis Thaliana

Barragan AC et al.

bioRxiv

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The First Antechinus Reference Genome Provides A Resource For Investigating The Genetic Basis Of Semelparity And Age-Related Neuropathologies

Brandies PA et al.

bioRxiv

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Repeated Introduction And Spread Of The MRSA Clone T304/St6 In Northern Europe

Bartels MD et al.

Clinical Microbiology and Infections

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Thiosulfinate Tolerance Is A Virulence Strategy Of An Atypical Bacterial Pathogen Of Onion

Stice SP et al.

Current Biology

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Cell-Cycle-Dependent Erk Signaling Dynamics Direct Fate Specification In The Mammalian Preimplantation Embryo

Pokrass MJ et al.

Developmental Cell

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Genome Sequencing Of Four Culinary Herbs Reveals Terpenoid Genes Underlying Chemodiversity In The Nepetoideae

Bornowski N et al.

DNA Research

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Strong Population Differentiation In Lingcod (Ophiodon Elongatus) Is Driven By A Small Portion Of The Genome

Longo GC et al.

Evolutionary Applications

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Nanopore Minion Sequencing Reveals Possible Transfer Of Blakpc–2 Plasmid Across Bacterial Species In Two Healthcare Facilities

Prussing C et al.

Frontiers in Microbiology

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A Nanopore Based Chromosome-Level Assembly Representing Atlantic Cod From The Celtic Sea

Kirubakaran TG et al.

G3: Genes, Genomes, Genetics

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A Reference Genome Sequence For Giant Sequoia

Scott AD et al.

G3: Genes, Genomes, Genetics

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A Highly Contiguous Genome For The Golden-Fronted Woodpecker (Melanerpes Aurifrons) Via Hybrid Oxford Nanopore And Short Read Assembly

Wiley G et al.

G3: Genes, Genomes, Genetics

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Establishment Of An eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled From Short And Long Reads

Law WD et al.

Genomics

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Construction Of A Chromosome-Scale Long-Read Reference Genome Assembly For Potato

Pham GM et al.

Gigascience

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Association Between Vancomycin-Resistant Enterococcus Faecium Colonization And Subsequent Infection: A Retrospective WGS Study

Rubin IMC et al.

Journal of Antimicrobial Chemotherapy

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Complete Genome Sequence Of Burkholderia Cenocepacia K56-2, An Opportunistic Pathogen

García-Romero I et al.

Microbiology Resource Announcements

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Complete Genome Of Isoprene Degrading Nocardioides Sp. Ws12

Gibson L et al.

Microorganisms

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Sphingopyxis Sp. Strain OPL5, An Isoprene-Degrading Bacterium From The Sphingomonadaceae Family Isolated From Oil Palm Leaves

Larke-Mejía NL et al.

Microorganisms

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A Truncated Singleton NLR Causes Hybrid Necrosis In Arabidopsis Thaliana

Barragan AC et al.

Molecular Biology and Evolution

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Chromosomal‐Level Genome Assembly Of The Scimitar‐Horned Oryx: Insights Into Diversity And Demography Of A Species Extinct In The Wild

Humble E et al.

Molecular Ecology Resources

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Targeted Nanopore Sequencing With Cas9-Guided Adapter Ligation

Gilpatrick T et al.

Nature Biotechnology

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Standardized Bacteriophage Purification For Personalized Phage Therapy

Luong T et al.

Nature Protocols

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First Record Of A Tandem-Repeat Region Within The Mitochondrial Genome Of Clonorchis Sinensis Using A Long-Read Sequencing Approach

Kinkar L et al.

PLoS Neglected Tropical Diseases

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High Data Throughput And Low Cost Ultra Long Nanopore Sequencing

Kilburn D et al.

T2T / HPRC 2020 Conference

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Generating Ultra Long Reads On Oxford Nanopore Minion/Gridion/Promethion

Liu KJ et al.

ABRF 2020. Palm Springs, CA

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High Molecular Weight DNA Sample And Library Preparation For Long-Read Sequencing Using Clinical Tissue Specimens

Liu KJ et al.

AGBT 2020. Marco Island, FL

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Automated High Molecular Weight DNA Extraction For Production Scale Long-Read Sequencing

Burke JM et al.

AGBT 2020. Marco Island, FL

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High MW DNA Extraction From Diverse Animal And Plant Species

Kim M et al.

PAGXXVIII 2020. San Diego, CA

2019
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High Molecular Weight DNA Isolation Method From Diverse Plant Species For Use With Oxford Nanopore Sequencing

Vaillancourt B et al.

bioRxiv

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Resistance To Piperacillin/Tazobactam In Escherichia Coli Resulting From Extensive Is26-Associated Gene Amplification Of Blatem-1

Hansen KH et al.

Journal of Antimicrobial Chemotherapy

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Streamlined SMRTbell Library Generation Using Addition-Only, Single Tube Strategy For All Library Types Reduces Time To Results.

Ekholm J et al.

ABRF 2019

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Complete Genome Sequence Of Luteibacter Pinisoli Mah-14

Baltrus DA et al.

Microbiology Resource Announcements

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Scaling Up Production Of HMW DNA

Liu KJ et al.

PAGXXVII 2019. San Diego, CA

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Rapid High Mw Dna Extraction From Plant, Insect, Cell, And Tissue Samples For Long-Read Sequencing Using Nanobind Magnetic Disks

Liu KJ et al.

PAGXXVII 2019. San Diego, CA

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Microbial Multiplexing Workflow On The Sequel System Using The Smrtbell Express Template Prep Kit 2.0.

Pacific Biosciences

Application Note

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Rapid Extraction And Size Selection Of High MW DNA For Long-Read Sequencing Using Nanobind Magnetic Disks.

Liu KJ et al.

AGBT 2019. Marco Island, FL

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Streamlined SMRTbell Library Generation Using Addition-Only, Single Tube Strategy For All Library Types Reduces Time To Results

Ekholm J et al.

ABRF 2019. San Antonio, TX

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High-Throughput High MW DNA Extraction And Size Selection For Long-Read Sequencing

Liu KJ et al.

ABRF 2019. San Antonio, TX

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The Fever Tree: Extracting And Preparing The DNA Of Cinchona Pubescens

Costa V et al.

London Calling 2019. London, UK

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High-Throughput High MW DNA Extraction And Size Selection For Long-Read Sequencing

Liu KJ et al.

NHGRI Advanced Genomic Technologies Meeting 2019. Boston, MA

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Algal Nuclei Isolation For Nanopore Sequencing Of HMW DNA

Auber R et al.

protocols.io

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High-Throughput High Molecular Weight Dna Extraction From Human Tissue Samples For Long-Read Sequencing

Liu KJ et al.

ASHG 2019. Houston, TX

2018
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High Molecular Weight Conifer DNA Extraction For Nanopore Sequencing

Workman¹ R et al.

AGBT 2018

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Single Chromosomal Genome Assemblies On The Sequel System With Circulomics High Molecular Weight DNA Extraction For Microbes

Heiner C et al.

ASM Microbe 2018

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Nanopore Sequencing In The Redwood Genome Project: Dna Extraction To Sequencing Optimization

Workman R et al.

Nanopore Day DC 2018. Washington DC

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Optimizing High Molecular Weight Gdna Extraction For Single Molecule Sequencing In The Redwood Genome Project

Workman R et al.

ABRF 2018. Myrtle Beach, FL

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Optimizing High Molecular Weight Conifer gDNA Extraction And Single Molecule Sequencing In The Redwood Genome Project

Workman R et al.

SFAF 2018. Santa Fe, NM

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Promethion Sequencing Of Complex Plant Genomes

Wittenberg A et al.

London Calling 2018. London, UK

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High Molecular Weight DNA Extraction From Recalcitrant Plant Species For Third Generation Sequencing

Workman R et al.

Protocol Exchange

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Nanobind Magnetic Disks For Rapid High MW DNA Extraction And Library Preparation In Long-Read Sequencing And Optical Mapping Applications

Liu KJ et al.

NHGRI Advanced Sequencing Meeting 2018. Boston, MA

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Get It Bigger, Better, Barcoded

Fuentes-Utrilla P et al.

Genome Science 2018. Nottingham, UK

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Nanobind High MW DNA Extraction And Library Preparation For Long-Read Sequencing And Optical Mapping

Liu KJ et al.

G10K Annual Meeting 2018. New York

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Single Chromosomal Genome Assemblies On The Sequel System With Circulomics High Molecular Weight Dna Extraction For Microbes

Wong J et al.

Lake Arrowhead Microbial Genomics 2018. Lake Arrowhead, CA

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Single Chromosomal Genome Assemblies On The Sequel System With Circulomics High Molecular Weight Dna Extraction For Microbes

Wong J et al.

ASM Conf on NGS 2018. Tysons, VA

2017
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Extracting Dna For Nanopore Sequencing In The Redwood Genome Project

Timp W et al.

Nanopore Community Meeting 2017, New York

2016
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A Simple Thermoplastic Substrate Containing Hierarchical Silica Lamellae For High‐Molecular‐Weight Dna Extraction

Zhang Y et al.

Advanced Materials