Nanobind Publications
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2022
A Repackaged Crispr Platform Increases Homology-Directed Repair For Yeast Engineering
Ploessl D et al.
Nature Chemical Biology
Assembled And Annotated 26.5 Gbp Coast Redwood Genome: A Resource For Estimating Evolutionary Adaptive Potential And Investigating Hexaploid Origin
Neale DB et al.
G3: Genes, Genomics, Genetics
Epigenetic Comparison Of Cho Hosts And Clones Reveals Divergent Methylation And Transcription Patterns Across Lineages
Chang M et al.
Biotechnology and Bioengineering
Genome Sequences Of Soft Rot-Causing Pectobacterium Isolates From Different Vegetables
Wasendorf C et al.
Microbiology Resource Announcements
Plant Growth-Promoting Activity Of Pseudomonas Aeruginosa Fg106 And Its Ability To Act As A Biocontrol Agent Against Potato, Tomato And Taro Pathogens
Ghadamgahi F et al.
Biology
The Hidden Structural Variability In Avian Genomes
Peona V et al.
bioRxiv
A Protocol For Locating And Counting Transgenic Sequences From Laboratory Animals Using A Map-Then-Capture (Mapcap) Sequencing Workflow: Procedure And Application of Results
Dicke SS et al.
bioRxiv
A New Transgene Mouse Model Using An Extravesicular Egfp Tag Enables Affinity Isolation Of Cell-Specific Extracellular Vesicles
Nørgård MØ et al.
Scientific Reports
2020
High Molecular Weight DNA Extraction And Long-Read Next-Generation Sequencing Of Human Genomic Reference Standards
Mitchell MW et al.
ASHG 2020
Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled
Kovaka S et al.
Nature Biotechnology
Ecological Adaptation In Atlantic Herring Is Associated With Large Shifts In Allele Frequencies At Hundreds Of Loci
Han F et al.
eLife
De Novo Whole-Genome Sequencing And Annotation Of Pathogenic Bovine Pasteurella Multocida Type A: 3 Strains
Livingstone M et al.
Microbiology Resource Announcements
Chromosomal Assembly Of The Nuclear Genome Of The Endosymbiont-Bearing Trypanosomatid Angomonas Deanei
Davey JW et al.
Developmental Cell
High Data Throughput and Low Cost Ultra Long Nanopore Sequencing
Kilburn D et al.
Nanopore Community Meeting 2020
Adventures Towards Error-Free Genomes
Balacco J et al.
PacBio Virtual Global Summit 2020
Generating High Quality Sequencing Data: A Focus On Sample Prep
Liu KJ et al.
Genome Generation 2020
Optimizing the Extraction of High Molecular Weight DNA From Tissue
Kim M et al.
Joint Webinar with Covaris
Generating Large Numbers of Ultra Long Reads on PromethION
Kilburn D et al.
London Calling 2020 Online
Complete Microbial Genomes For Public Health In Australia And The Southwest Pacific
Baines SL et al.
Microbial Genomics
Genome Mining And Metabolomics Uncover A Rare D-Capreomycidine Containing Natural Product And Its Biosynthetic Gene Cluster
Tryon JH et al.
ACS Chemical Biology
Chromosomal Translocation Disrupting The SMAD4 Gene Resulting In The Combined Phenotype Of Juvenile Polyposis Syndrome And Hereditary Hemorrhagic Telangiectasia
Aagaard KS et al.
Molecular Genetics & Genomic Medicine
3D Printing-Enabled DNA Extraction For Long-Read Genomics
Agrawal P et al.
ACS Omega
A Phased Canis Lupus Familiaris Labrador Retriever Reference Genome Utilizing High Molecular Weight Dna Extraction Methods And High Resolution Sequencing Technologies
Player RA et al.
bioRxiv
Long-Read Sequencing To Interrogate Strain-Level Variation Among Adherent-Invasive Escherichia Coli Isolated From Human Intestinal Tissue
Wang J et al.
bioRxiv
A Draft Genome Of Grass Pea (Lathyrus Sativus), A Resilient Diploid Legume
Emmrich PMF et al.
bioRxiv
The Giant Sequoia Genome And Proliferation Of Disease Resistance Genes
Scott AD et al.
bioRxiv
Complete Vertebrate Mitogenomes Reveal Widespread Gene Duplications And Repeats
Formenti G et al.
bioRxiv
Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled
Kovaka S et al.
bioRxiv
Huntingtin Lowering Reduces Somatic Instability At CAG-Expanded Loci
Coffey SR et al.
bioRxiv
The Genetic Architecture Underlying Ecological Adaptation In Atlantic Herring Is Not Consistent With The Infinitesimal Model
Han F et al.
bioRxiv
A Singleton NLR Of Recent Origin Causes Hybrid Necrosis In Arabidopsis Thaliana
Barragan AC et al.
bioRxiv
The First Antechinus Reference Genome Provides A Resource For Investigating The Genetic Basis Of Semelparity And Age-Related Neuropathologies
Brandies PA et al.
bioRxiv
Repeated Introduction And Spread Of The MRSA Clone T304/St6 In Northern Europe
Bartels MD et al.
Clinical Microbiology and Infections
Thiosulfinate Tolerance Is A Virulence Strategy Of An Atypical Bacterial Pathogen Of Onion
Stice SP et al.
Current Biology
Cell-Cycle-Dependent Erk Signaling Dynamics Direct Fate Specification In The Mammalian Preimplantation Embryo
Pokrass MJ et al.
Developmental Cell
Genome Sequencing Of Four Culinary Herbs Reveals Terpenoid Genes Underlying Chemodiversity In The Nepetoideae
Bornowski N et al.
DNA Research
Strong Population Differentiation In Lingcod (Ophiodon Elongatus) Is Driven By A Small Portion Of The Genome
Longo GC et al.
Evolutionary Applications
Nanopore Minion Sequencing Reveals Possible Transfer Of Blakpc–2 Plasmid Across Bacterial Species In Two Healthcare Facilities
Prussing C et al.
Frontiers in Microbiology
A Nanopore Based Chromosome-Level Assembly Representing Atlantic Cod From The Celtic Sea
Kirubakaran TG et al.
G3: Genes, Genomes, Genetics
A Reference Genome Sequence For Giant Sequoia
Scott AD et al.
G3: Genes, Genomes, Genetics
A Highly Contiguous Genome For The Golden-Fronted Woodpecker (Melanerpes Aurifrons) Via Hybrid Oxford Nanopore And Short Read Assembly
Wiley G et al.
G3: Genes, Genomes, Genetics
Establishment Of An eHAP1 Human Haploid Cell Line Hybrid Reference Genome Assembled From Short And Long Reads
Law WD et al.
Genomics
Construction Of A Chromosome-Scale Long-Read Reference Genome Assembly For Potato
Pham GM et al.
Gigascience
Association Between Vancomycin-Resistant Enterococcus Faecium Colonization And Subsequent Infection: A Retrospective WGS Study
Rubin IMC et al.
Journal of Antimicrobial Chemotherapy
Complete Genome Sequence Of Burkholderia Cenocepacia K56-2, An Opportunistic Pathogen
García-Romero I et al.
Microbiology Resource Announcements
Complete Genome Of Isoprene Degrading Nocardioides Sp. Ws12
Gibson L et al.
Microorganisms
Sphingopyxis Sp. Strain OPL5, An Isoprene-Degrading Bacterium From The Sphingomonadaceae Family Isolated From Oil Palm Leaves
Larke-Mejía NL et al.
Microorganisms
A Truncated Singleton NLR Causes Hybrid Necrosis In Arabidopsis Thaliana
Barragan AC et al.
Molecular Biology and Evolution
Chromosomal‐Level Genome Assembly Of The Scimitar‐Horned Oryx: Insights Into Diversity And Demography Of A Species Extinct In The Wild
Humble E et al.
Molecular Ecology Resources
Targeted Nanopore Sequencing With Cas9-Guided Adapter Ligation
Gilpatrick T et al.
Nature Biotechnology
Standardized Bacteriophage Purification For Personalized Phage Therapy
Luong T et al.
Nature Protocols
First Record Of A Tandem-Repeat Region Within The Mitochondrial Genome Of Clonorchis Sinensis Using A Long-Read Sequencing Approach
Kinkar L et al.
PLoS Neglected Tropical Diseases
High Data Throughput And Low Cost Ultra Long Nanopore Sequencing
Kilburn D et al.
T2T / HPRC 2020 Conference
Generating Ultra Long Reads On Oxford Nanopore Minion/Gridion/Promethion
Liu KJ et al.
ABRF 2020. Palm Springs, CA
High Molecular Weight DNA Sample And Library Preparation For Long-Read Sequencing Using Clinical Tissue Specimens
Liu KJ et al.
AGBT 2020. Marco Island, FL
Automated High Molecular Weight DNA Extraction For Production Scale Long-Read Sequencing
Burke JM et al.
AGBT 2020. Marco Island, FL
High MW DNA Extraction From Diverse Animal And Plant Species
Kim M et al.
PAGXXVIII 2020. San Diego, CA
2021
Chromosome‐Level Thlaspi Arvense Genome Provides New Tools For Translational Research And For A Newly Domesticated Cash Cover Crop Of The Cooler Climates
Nunn A et al.
Plant Biotechnology
Complete Genome Sequence Of Bacillus Velezensis Gmekp1, Isolated From A Natural Bamboo Hive Of Stingless Bees
Widada J et al.
Microbiology Resource Announcements
Electronic Mapping Of A Bacterial Genome With Dual Solid-State Nanopores And Active Single-Molecule Control
Rand A et al.
bioRxiv
Extrachromosomal Amplification Of Human Papillomavirus Episomes As A Mechanism Of Cervical Carcinogenesis
Rossi NM et al.
bioRxiv
Genome Assembly Of The Australian Black Tiger Shrimp (Penaeus Monodon) Reveals A Fragmented Ihhnv Eve Sequence
Huerlimann R et al.
bioRxiv
Genome Sequence Of The English Grain Aphid, Sitobion Avenae And Its Endosymbiont Buchnera Aphidicola
Byrne S et al.
G3: Genes, Genomics, Genetics
Long-Read Sequencing To Interrogate Strain-Level Variation Among Adherent-Invasive Escherichia Coli Isolated From Human Intestinal Tissue
Wang J et al.
PLoS One
Standing Genetic Variation Fuels Rapid Evolution Of Herbicide Resistance In Blackgrass
Kersten S et al.
bioRxiv
Targeted Nanopore Sequencing By Real-Time Mapping Of Raw Electrical Signal With Uncalled
Kovaka S et al.
Nature Biotechnology
The Pink Salmon Genome: Uncovering The Genomic Consequences Of A Two-Year Life Cycle
Christensen KA et al.
PLoS One
A Reference Genome For The Critically Endangered Woylie, Bettongia Penicillata Ogilbyi
Peel E et al.
bioRxiv
No Evidence Of Human Genome Integration Of Sars-Cov-2 Found By Long-Read Dna Sequencing
Smits N et al.
Cell Reports
Rapid Characterization Of Complex Killer Cell Immunoglobulin-Like Receptor (Kir) Regions Using Cas9 Enrichment And Nanopore Sequencing
Bruijnesteijn J et al.
Frontiers in Immunology
The Pink Salmon Genome: Uncovering The Genomic Consequences Of A Strict Two-Year Life-Cycle
Christensen KA et al.
bioRxiv
Characterization Of The First Carbapenem-Resistant Pseudomonas Aeruginosa Clinical Isolate Harboring Blasim-1 From The United States
Prussing C et al.
Antimicrobial Agents and Chemotherapy
Characterization Of Fmr1 Repeat Expansion And Intragenic Variants By Indirect Sequence Capture
Grosso V et al.
Frontiers in Genetics
Complete Genome Sequence Of The Marine-Derived Bacterium Streptomyces Sp. Strain Gmy02
Widada J et al.
Microbiology Resource Announcements
A Highly Contiguous Nuclear Genome Assembly Of The Mandarinfish Synchiropus Splendidus (Syngnathiformes: Callionymidae)
Stervander M et al.
G3: Genes, Genomics, Genetics
Genome Assembly Of The Popular Korean Soybean Cultivar Hwangkeum
Kim MS et al.
G3: Genes, Genomics, Genetics
Long-Read Sequencing Of The Zebrafish Genome Reorganizes Genomic Architecture
Chernyavskaya Y et al.
bioRxiv
Methylartist: Tools For Visualising Modified Bases From Nanopore Sequence Data
Cheetham SW et al.
bioRxiv
Mitochondrial Genome Of Geomydoecus Aurei, A Pocket-Gopher Louse
Spradling TA et al.
PLoS One
Environmental And Pathogenic Carbapenem Resistant Bacteria Isolated From A Wastewater Treatment Plant Harbour Distinct Antibiotic Resistance Mechanisms
Oliveira M et al.
Antibiotics
A New Transgene Mouse Model Using An Extravesicular Egfp Tag To Elucidate The In Vivo Function Of Extracellular Vesicles
Nørgård MØ et al.
bioRxiv
Chromosome-Level Thlaspi Arvense Genome Provides New Tools For Translational Research And For A Newly Domesticated Cash Cover Crop Of The Cooler Climates
Nunn A et al.
bioRxiv
Gene Losses In The Common Vampire Bat Illuminate Molecular Adaptations To Blood Feeding
Blumer M et al.
bioRxiv
Fanconi Anemia Pathway Deficiency Drives Copy Number Variation In Squamous Cell Carcinomas
Webster ALH et al.
bioRxiv
Insights From The Genomes Of Four Diploid Camelina Spp.
Martin SL et al.
bioRxiv
Human Genome Integration Of Sars-Cov-2 Contradicted By Long-Read Sequencing
Smits N et al.
bioRxiv
Complete Genome Sequence Of A Canadian Strain Of Raoultella Planticola With Metal And Antimicrobial Resistance Genes
Kang M et al.
Microbiology Resource Announcements
The Genome Assembly And Annotation Of The Apollo Butterfly Parnassius Apollo, A Flagship Species For Conservation Biology
Podsiadlowski L et al.
Genome Biology and Evolution
Complete Vertebrate Mitogenomes Reveal Widespread Repeats And Gene Duplications
Formenti G et al.
Genome Biology
Genome Assembly Of The Popular Korean Soybean Cultivar Hwangkeum
Jeong SC et al.
bioRxiv
Fatal Exudative Dermatitis In Island Populations Of Red Squirrels (Sciurus Vulgaris): Spillover Of A Virulent Staphylococcus Aureus Clone (St49) From Reservoir Hosts
Fountain K et al.
Microbia Genomics
Sex Chromosome Transformation And The Origin Of A Male-Specific X Chromosome In The Creeping Vole
Couger MB et al.
Science
A Chromosome‐Level Amaranthus Cruentus Genome Assembly Highlights Gene Family Evolution And Biosynthetic Gene Clusters That May Underpin The Nutritional Value …
Ma X et al.
The Plant Journal
Induction Of An Immortalized Songbird Cell Line Allows For Gene Characterization And Knockout By Crispr-Cas9
Biegler MT et al.
bioRxiv
Chromosomal Assembly Of The Nuclear Genome Of The Endosymbiont-Bearing Trypanosomatid Angomonas Deanei
Davey JW et al.
G3: Genes, Genomes, Genetics
The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data
Steward RA et al.
Genome Biology and Evolution
Epigenetically Regulated Digital Signaling Defines Epithelial Innate Immunity At The Tissue Level
Clark HR et al.
Nature Communications
Rapid Characterization Of Complex Genomic Regions Using Cas9 Enrichment And Nanopore Sequencing
Bruijnesteijn J et al.
bioRxiv
Haplotype-Aware Variant Calling Enables High Accuracy In Nanopore Long-Reads Using Deep Neural Networks
Shafin K et al.
bioRxiv
High-Quality Reference Genome For Clonorchis Sinensis
Young ND et al.
Genomics
The Genome Of The Margined White Butterfly (Pieris Macdunnoughii): Sex Chromosome Insights And The Power Of Polishing With Poolseq Data
Steward RA et al.
Genome Biology and Evolution
DNA Preparation In Vitis Vinifera L. For Third Generation Sequencing
Bibi AC et al.
bioRxiv